J3_8YLR_035
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8YLR|1|A|A|2703, 8YLR|1|A|A|2705
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YLR_035 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1312
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8YLR|1|A|C|2664
8YLR|1|A|U|2665
8YLR|1|A|C|2666
*
8YLR|1|A|G|2690
8YLR|1|A|A|2691
8YLR|1|A|A|2692
*
8YLR|1|A|U|2701
8YLR|1|A|A|2702
8YLR|1|A|A|2703
8YLR|1|A|A|2704
8YLR|1|A|A|2705
8YLR|1|A|G|2706
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- Large ribosomal subunit protein uL18
- Chain M
- Large ribosomal subunit protein uL5B
- Chain V
- Large ribosomal subunit protein eL21A
- Chain t
- Transfer RNA; tRNA
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