J3_8YLR_042
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AAC*GGACUAU*AUGGAAGUUU
- Length
- 20 nucleotides
- Bulged bases
- 8YLR|1|2|U|1413, 8YLR|1|2|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YLR_042 not in the Motif Atlas
- Homologous match to J3_9H3G_042
- Geometric discrepancy: 0.3103
- The information below is about J3_9H3G_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8YLR|1|2|A|1336
8YLR|1|2|A|1337
8YLR|1|2|C|1338
*
8YLR|1|2|G|1386
8YLR|1|2|G|1387
8YLR|1|2|A|1388
8YLR|1|2|C|1389
8YLR|1|2|U|1390
8YLR|1|2|A|1391
8YLR|1|2|U|1392
*
8YLR|1|2|A|1406
8YLR|1|2|U|1407
8YLR|1|2|G|1408
8YLR|1|2|G|1409
8YLR|1|2|A|1410
8YLR|1|2|A|1411
8YLR|1|2|G|1412
8YLR|1|2|U|1413
8YLR|1|2|U|1414
8YLR|1|2|U|1415
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SB
- Small ribosomal subunit protein uS7
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SG
- Small ribosomal subunit protein eS17A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SL
- Small ribosomal subunit protein eS28A
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain SO
- Small ribosomal subunit protein RACK1
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