J3_8YOO_010

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8YOO|1|L5|A|4464, 8YOO|1|L5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YOO_010 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.0673

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

8YOO|1|L5|U|4463
8YOO|1|L5|A|4464
8YOO|1|L5|U|4465
8YOO|1|L5|C|4466
*
8YOO|1|L5|G|4491
8YOO|1|L5|U|4492
8YOO|1|L5|U|4493
*
8YOO|1|L5|A|4507
8YOO|1|L5|C|4508
8YOO|1|L5|U|4509
8YOO|1|L5|A|4510
8YOO|1|L5|A|4511
8YOO|1|L5|U|4512
8YOO|1|L5|A|4513

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23