J3_8YOO_021
3D structure
- PDB id
- 8YOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 8YOO|1|S2|U|1535, 8YOO|1|S2|G|1603
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YOO_021 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.0924
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8YOO|1|S2|C|1532
8YOO|1|S2|A|1533
8YOO|1|S2|C|1534
8YOO|1|S2|U|1535
8YOO|1|S2|G|1536
*
8YOO|1|S2|C|1597
8YOO|1|S2|G|1598
8YOO|1|S2|U|1599
8YOO|1|S2|G|1600
8YOO|1|S2|A|1601
8YOO|1|S2|U|1602
8YOO|1|S2|G|1603
8YOO|1|S2|G|1604
*
8YOO|1|S2|C|1635
8YOO|1|S2|G|1636
8YOO|1|S2|A|1637
8YOO|1|S2|G|1638
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SF
- 40S ribosomal protein S5
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- 40S ribosomal protein S19
- Chain SZ
- 40S ribosomal protein S25
Coloring options: