J3_8YOP_002
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8YOP|1|L5|A|1534, 8YOP|1|L5|G|1641
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YOP_002 not in the Motif Atlas
- Homologous match to J3_8P9A_049
- Geometric discrepancy: 0.0518
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8YOP|1|L5|U|1531
8YOP|1|L5|G|1532
8YOP|1|L5|A|1533
8YOP|1|L5|A|1534
8YOP|1|L5|C|1535
8YOP|1|L5|U|1536
8YOP|1|L5|A|1537
*
8YOP|1|L5|U|1622
8YOP|1|L5|A|1623
8YOP|1|L5|G|1624
*
8YOP|1|L5|C|1640
8YOP|1|L5|G|1641
8YOP|1|L5|A|1642
8YOP|1|L5|A|1643
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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