J3_8YP6_006

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUAG*CGUAG*CAUUAAG

Length

16 nucleotides

Bulged bases

8YP6|1|a|U|853

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YP6_006 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1433

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

8YP6|1|a|C|806
8YP6|1|a|U|807
8YP6|1|a|A|808
8YP6|1|a|G|809
*
8YP6|1|a|C|839
8YP6|1|a|G|840
8YP6|1|a|U|841
8YP6|1|a|A|842
8YP6|1|a|G|843
*
8YP6|1|a|C|850
8YP6|1|a|A|851
8YP6|1|a|U|852
8YP6|1|a|U|853
8YP6|1|a|A|854
8YP6|1|a|A|855
8YP6|1|a|G|856

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

Small ribosomal subunit protein uS8