J3_8YP6_017
3D structure
- PDB id
- 8YP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 8YP6|1|a|U|1221, 8YP6|1|a|U|1284
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YP6_017 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.2573
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
8YP6|1|a|C|1218
8YP6|1|a|A|1219
8YP6|1|a|A|1220
8YP6|1|a|U|1221
8YP6|1|a|G|1222
*
8YP6|1|a|C|1278
8YP6|1|a|U|1279
8YP6|1|a|C|1280
8YP6|1|a|A|1281
8YP6|1|a|G|1282
8YP6|1|a|U|1283
8YP6|1|a|U|1284
8YP6|1|a|C|1285
*
8YP6|1|a|G|1316
8YP6|1|a|U|1317
8YP6|1|a|C|1318
8YP6|1|a|G|1319
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain m
- Small ribosomal subunit protein uS13
Coloring options: