J3_8YUO_006

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8YUO|1|A|U|871, 8YUO|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YUO_006 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0568

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8YUO|1|A|C|826
8YUO|1|A|U|827
8YUO|1|A|U|828
8YUO|1|A|G|829
*
8YUO|1|A|C|857
8YUO|1|A|G|858
8YUO|1|A|G|859
8YUO|1|A|A|860
8YUO|1|A|G|861
*
8YUO|1|A|C|868
8YUO|1|A|G|869
8YUO|1|A|U|870
8YUO|1|A|U|871
8YUO|1|A|A|872
8YUO|1|A|A|873
8YUO|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8

Chain U

30S ribosomal protein S21