J3_8YUO_019

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8YUO|1|a|A|504, 8YUO|1|a|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YUO_019 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1277

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8YUO|1|a|G|30
8YUO|1|a|C|31
*
8YUO|1|a|G|474
8YUO|1|a|C|475
8YUO|1|a|G|476
8YUO|1|a|A|477
8YUO|1|a|A|478
8YUO|1|a|A|479
8YUO|1|a|A|480
8YUO|1|a|G|481
8YUO|1|a|A|482
8YUO|1|a|A|483
8YUO|1|a|C|484
*
8YUO|1|a|G|496
8YUO|1|a|A|497
8YUO|1|a|G|498
8YUO|1|a|U|499
8YUO|1|a|G|500
8YUO|1|a|A|501
8YUO|1|a|A|502
8YUO|1|a|A|503
8YUO|1|a|A|504
8YUO|1|a|A|505
8YUO|1|a|G|506
8YUO|1|a|A|507
8YUO|1|a|A|508
8YUO|1|a|C|509
8YUO|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22

Chain t

50S ribosomal protein L24