J3_8YUQ_025

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

8YUQ|1|a|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YUQ_025 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0734

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8YUQ|1|a|C|1298
8YUQ|1|a|G|1299
8YUQ|1|a|G|1300
8YUQ|1|a|A|1301
8YUQ|1|a|A|1302
8YUQ|1|a|G|1303
*
8YUQ|1|a|C|1625
8YUQ|1|a|A|1626
8YUQ|1|a|G|1627
*
8YUQ|1|a|C|1639
8YUQ|1|a|A|1640
8YUQ|1|a|A|1641
8YUQ|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains