J3_8YUQ_028

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YUQ_028 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0545

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8YUQ|1|a|G|1424
8YUQ|1|a|G|1425
8YUQ|1|a|G|1426
8YUQ|1|a|A|1427
8YUQ|1|a|C|1428
8YUQ|1|a|G|1429
*
8YUQ|1|a|C|1564
8YUQ|1|a|C|1565
*
8YUQ|1|a|G|1568
8YUQ|1|a|A|1569
8YUQ|1|a|A|1570
8YUQ|1|a|A|1571
8YUQ|1|a|A|1572
8YUQ|1|a|G|1573
8YUQ|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2