3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UU*AGAAG*CAUUUGA
Length
14 nucleotides
Bulged bases
8Z70|1|A|A|1065, 8Z70|1|A|U|1094, 8Z70|1|A|U|1095
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Z70_025 not in the Motif Atlas
Homologous match to J3_8P9A_051
Geometric discrepancy: 0.3233
The information below is about J3_8P9A_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_09667.1
Basepair signature
cWW-cWW-F-F-cSS-F-F-cWW
Number of instances in this motif group
2

Unit IDs

8Z70|1|A|U|986
8Z70|1|A|U|987
*
8Z70|1|A|A|1062
8Z70|1|A|G|1063
8Z70|1|A|A|1064
8Z70|1|A|A|1065
8Z70|1|A|G|1066
*
8Z70|1|A|C|1092
8Z70|1|A|A|1093
8Z70|1|A|U|1094
8Z70|1|A|U|1095
8Z70|1|A|U|1096
8Z70|1|A|G|1097
8Z70|1|A|A|1098

Current chains

Chain A
25S rRNA

Nearby chains

Chain I
Large ribosomal subunit protein uL30A
Chain V
Large ribosomal subunit protein eL21A
Chain d
Large ribosomal subunit protein eL29

Coloring options:


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