J3_8Z70_026

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8Z70|1|A|A|1482, 8Z70|1|A|U|1484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Z70_026 not in the Motif Atlas

Homologous match to J3_8P9A_053

Geometric discrepancy: 0.1995

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8Z70|1|A|U|1479
8Z70|1|A|G|1480
8Z70|1|A|A|1481
8Z70|1|A|A|1482
8Z70|1|A|G|1483
8Z70|1|A|U|1484
8Z70|1|A|G|1485
*
8Z70|1|A|C|1857
8Z70|1|A|A|1858
8Z70|1|A|A|1859
*
8Z70|1|A|U|1871
8Z70|1|A|C|1872
8Z70|1|A|U|1873
8Z70|1|A|A|1874

Current chains

Chain A

25S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein eL19A

Chain i

Large ribosomal subunit protein eL34A