J3_8Z71_007
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8Z71|1|2|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Z71_007 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1318
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8Z71|1|2|A|881
8Z71|1|2|U|882
8Z71|1|2|C|883
8Z71|1|2|A|884
*
8Z71|1|2|U|928
8Z71|1|2|A|929
8Z71|1|2|A|930
8Z71|1|2|C|931
8Z71|1|2|U|932
8Z71|1|2|A|933
8Z71|1|2|C|934
8Z71|1|2|U|935
8Z71|1|2|G|936
*
8Z71|1|2|C|943
8Z71|1|2|A|944
8Z71|1|2|U|945
8Z71|1|2|U|946
8Z71|1|2|U|947
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain SZ
- Small ribosomal subunit protein uS11B
- Chain Se
- Small ribosomal subunit protein eS26A
- Chain r
- Large ribosomal subunit protein eL43A
Coloring options: