J3_8Z71_012

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8Z71|1|2|A|1217, 8Z71|1|2|G|1445, 8Z71|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Z71_012 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.2036

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8Z71|1|2|C|1215
8Z71|1|2|C|1216
8Z71|1|2|A|1217
8Z71|1|2|G|1218
8Z71|1|2|A|1219
8Z71|1|2|C|1220
*
8Z71|1|2|G|1263
8Z71|1|2|G|1264
8Z71|1|2|G|1265
8Z71|1|2|U|1266
8Z71|1|2|G|1267
*
8Z71|1|2|U|1442
8Z71|1|2|U|1443
8Z71|1|2|A|1444
8Z71|1|2|G|1445
8Z71|1|2|A|1446
8Z71|1|2|C|1447
8Z71|1|2|G|1448

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SC

Small ribosomal subunit protein eS10A

Chain SM

Small ribosomal subunit protein uS14A

Chain SN

Small ribosomal subunit protein eS31