J3_8Z71_017
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 8Z71|1|2|U|1473, 8Z71|1|2|G|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Z71_017 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.1964
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8Z71|1|2|C|1470
8Z71|1|2|A|1471
8Z71|1|2|C|1472
8Z71|1|2|U|1473
8Z71|1|2|G|1474
*
8Z71|1|2|C|1533
8Z71|1|2|G|1534
8Z71|1|2|U|1535
8Z71|1|2|G|1536
8Z71|1|2|C|1537
8Z71|1|2|U|1538
8Z71|1|2|G|1539
8Z71|1|2|G|1540
*
8Z71|1|2|C|1571
8Z71|1|2|G|1572
8Z71|1|2|A|1573
8Z71|1|2|G|1574
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SB
- Small ribosomal subunit protein uS7
- Chain SH
- Small ribosomal subunit protein uS13A
- Chain SI
- Small ribosomal subunit protein eS19A
- Chain SK
- Small ribosomal subunit protein eS25A
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