J3_8ZDB_002
3D structure
- PDB id
- 8ZDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 8ZDB|1|2|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZDB_002 not in the Motif Atlas
- Homologous match to J3_8C3A_083
- Geometric discrepancy: 0.0921
- The information below is about J3_8C3A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.2
- Basepair signature
- cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8ZDB|1|2|A|40
8ZDB|1|2|G|41
8ZDB|1|2|A|42
8ZDB|1|2|U|43
8ZDB|1|2|U|44
8ZDB|1|2|A|45
8ZDB|1|2|A|46
8ZDB|1|2|G|47
*
8ZDB|1|2|C|479
8ZDB|1|2|G|480
8ZDB|1|2|C|481
8ZDB|1|2|G|482
8ZDB|1|2|C|483
8ZDB|1|2|A|484
8ZDB|1|2|A|485
8ZDB|1|2|A|486
8ZDB|1|2|U|487
*
8ZDB|1|2|A|512
8ZDB|1|2|G|513
8ZDB|1|2|U|514
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain J
- Small ribosomal subunit protein uS4
- Chain X
- Small ribosomal subunit protein uS12
Coloring options: