J3_8ZDB_004
3D structure
- PDB id
- 8ZDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8ZDB|1|2|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZDB_004 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1299
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8ZDB|1|2|A|938
8ZDB|1|2|U|939
8ZDB|1|2|U|940
8ZDB|1|2|C|941
*
8ZDB|1|2|G|985
8ZDB|1|2|G|986
8ZDB|1|2|A|987
8ZDB|1|2|C|988
8ZDB|1|2|C|989
8ZDB|1|2|A|990
8ZDB|1|2|G|991
8ZDB|1|2|A|992
8ZDB|1|2|G|993
*
8ZDB|1|2|C|1000
8ZDB|1|2|A|1001
8ZDB|1|2|U|1002
8ZDB|1|2|U|1003
8ZDB|1|2|U|1004
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein eS1
- Chain N
- Small ribosomal subunit protein uS15
- Chain O
- Small ribosomal subunit protein uS11
- Chain a
- Small ribosomal subunit protein eS26
Coloring options: