J3_8ZDB_013
3D structure
- PDB id
- 8ZDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 8ZDB|1|2|U|1535, 8ZDB|1|2|G|1603
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZDB_013 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.141
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8ZDB|1|2|C|1532
8ZDB|1|2|A|1533
8ZDB|1|2|C|1534
8ZDB|1|2|U|1535
8ZDB|1|2|G|1536
*
8ZDB|1|2|C|1597
8ZDB|1|2|G|1598
8ZDB|1|2|U|1599
8ZDB|1|2|G|1600
8ZDB|1|2|A|1601
8ZDB|1|2|U|1602
8ZDB|1|2|G|1603
8ZDB|1|2|G|1604
*
8ZDB|1|2|C|1635
8ZDB|1|2|G|1636
8ZDB|1|2|A|1637
8ZDB|1|2|G|1638
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- Small ribosomal subunit protein uS7
- Chain S
- Small ribosomal subunit protein uS13
- Chain T
- Small ribosomal subunit protein eS19
- Chain Z
- Small ribosomal subunit protein eS25
- Chain p
- Serine/threonine-protein kinase RIO3
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