J3_8ZDC_001

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZDC_001 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.0824

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8ZDC|1|2|A|40
8ZDC|1|2|G|41
*
8ZDC|1|2|C|481
8ZDC|1|2|G|482
8ZDC|1|2|C|483
8ZDC|1|2|A|484
8ZDC|1|2|A|485
8ZDC|1|2|A|486
8ZDC|1|2|U|487
*
8ZDC|1|2|A|512
8ZDC|1|2|G|513
8ZDC|1|2|U|514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain X

Small ribosomal subunit protein uS12

Chain u

Pre-rRNA-processing protein TSR1 homolog