J3_8ZDC_004

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

8ZDC|1|2|C|1138, 8ZDC|1|2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZDC|1|2|C|1094
8ZDC|1|2|C|1095
8ZDC|1|2|G|1096
*
8ZDC|1|2|U|1136
8ZDC|1|2|U|1137
8ZDC|1|2|C|1138
8ZDC|1|2|C|1139
8ZDC|1|2|G|1140
*
8ZDC|1|2|C|1147
8ZDC|1|2|A|1148
8ZDC|1|2|A|1149
8ZDC|1|2|A|1150
8ZDC|1|2|G|1151

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Small ribosomal subunit protein uS2

Chain V

Small ribosomal subunit protein eS21

Chain W

Small ribosomal subunit protein uS8

Chain b

Small ribosomal subunit protein eS27

Chain y

RNA-binding protein NOB1