J3_8ZEJ_005
3D structure
- PDB id
- 8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 8ZEJ|1|A|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZEJ_005 not in the Motif Atlas
- Geometric match to J3_5J7L_003
- Geometric discrepancy: 0.1338
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8ZEJ|1|A|U|672
8ZEJ|1|A|A|673
*
8ZEJ|1|A|U|717
8ZEJ|1|A|A|718
8ZEJ|1|A|C|719
8ZEJ|1|A|C|720
8ZEJ|1|A|G|721
8ZEJ|1|A|G|722
8ZEJ|1|A|U|723
8ZEJ|1|A|G|724
8ZEJ|1|A|G|725
*
8ZEJ|1|A|C|732
8ZEJ|1|A|G|733
8ZEJ|1|A|G|734
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S6, fully modified isoform
- Chain K
- Small ribosomal subunit protein uS11
- Chain O
- 30S ribosomal protein S15
- Chain R
- 30S ribosomal protein S18
- Chain U
- 30S ribosomal protein S21
Coloring options: