J3_8ZEJ_029

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZEJ_029 not in the Motif Atlas

Geometric match to J3_7A0S_019

Geometric discrepancy: 0.1524

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8ZEJ|1|b|G|1424
8ZEJ|1|b|G|1425
8ZEJ|1|b|G|1426
8ZEJ|1|b|A|1427
8ZEJ|1|b|C|1428
8ZEJ|1|b|G|1429
*
8ZEJ|1|b|C|1564
8ZEJ|1|b|C|1565
*
8ZEJ|1|b|G|1568
8ZEJ|1|b|A|1569
8ZEJ|1|b|A|1570
8ZEJ|1|b|A|1571
8ZEJ|1|b|A|1572
8ZEJ|1|b|G|1573
8ZEJ|1|b|C|1574

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2