J3_8ZFF_026

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8ZFF|1|a|A|1609, 8ZFF|1|a|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZFF_026 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.0986

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8ZFF|1|a|C|1306
8ZFF|1|a|A|1307
8ZFF|1|a|A|1308
8ZFF|1|a|G|1309
*
8ZFF|1|a|C|1605
8ZFF|1|a|C|1606
8ZFF|1|a|C|1607
8ZFF|1|a|A|1608
8ZFF|1|a|A|1609
8ZFF|1|a|A|1610
8ZFF|1|a|C|1611
*
8ZFF|1|a|G|1620
8ZFF|1|a|U|1621
8ZFF|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34