J3_8ZFG_033

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8ZFG|1|a|A|2518, 8ZFG|1|a|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZFG_033 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1795

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8ZFG|1|a|C|2517
8ZFG|1|a|A|2518
8ZFG|1|a|U|2519
8ZFG|1|a|C|2520
*
8ZFG|1|a|G|2545
8ZFG|1|a|U|2546
8ZFG|1|a|A|2547
*
8ZFG|1|a|U|2561
8ZFG|1|a|U|2562
8ZFG|1|a|U|2563
8ZFG|1|a|A|2564
8ZFG|1|a|A|2565
8ZFG|1|a|A|2566
8ZFG|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein uL14