J3_8ZFI_026

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

8ZFI|1|b|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZFI_026 not in the Motif Atlas

Geometric match to J3_5J7L_041

Geometric discrepancy: 0.1366

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8ZFI|1|b|C|1298
8ZFI|1|b|G|1299
8ZFI|1|b|G|1300
8ZFI|1|b|A|1301
8ZFI|1|b|A|1302
8ZFI|1|b|G|1303
*
8ZFI|1|b|C|1625
8ZFI|1|b|A|1626
8ZFI|1|b|G|1627
*
8ZFI|1|b|C|1639
8ZFI|1|b|A|1640
8ZFI|1|b|A|1641
8ZFI|1|b|G|1642

Current chains

Chain b

RNA (2903-MER)

Nearby chains