J3_8ZGR_004
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8ZGR|1|LA|U|343, 8ZGR|1|LA|A|351, 8ZGR|1|LC|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZGR_004 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.053
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8ZGR|1|LA|C|340
8ZGR|1|LA|G|341
8ZGR|1|LA|A|342
8ZGR|1|LA|U|343
8ZGR|1|LA|A|344
8ZGR|1|LA|G|345
8ZGR|1|LA|C|346
8ZGR|1|LA|G|347
8ZGR|1|LA|A|348
8ZGR|1|LA|A|349
8ZGR|1|LA|C|350
8ZGR|1|LA|A|351
8ZGR|1|LA|A|352
8ZGR|1|LA|G|353
8ZGR|1|LA|U|354
8ZGR|1|LA|A|355
8ZGR|1|LA|C|356
*
8ZGR|1|LA|G|363
8ZGR|1|LA|G|364
8ZGR|1|LA|A|365
8ZGR|1|LA|A|366
8ZGR|1|LA|A|367
8ZGR|1|LA|G|368
*
8ZGR|1|LC|C|21
8ZGR|1|LC|U|22
8ZGR|1|LC|U|23
8ZGR|1|LC|G|24
Current chains
- Chain LA
- 25S rRNA (3393-MER)
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain La
- Large ribosomal subunit protein uL24A
- Chain Ll
- Large ribosomal subunit protein eL37A
- Chain Ln
- Large ribosomal subunit protein eL39
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