J3_8ZGR_006
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8ZGR|1|LA|A|398, 8ZGR|1|LA|U|401, 8ZGR|1|LA|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZGR_006 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.163
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8ZGR|1|LA|A|369
8ZGR|1|LA|U|370
8ZGR|1|LA|G|371
8ZGR|1|LA|A|372
8ZGR|1|LA|A|373
8ZGR|1|LA|A|374
8ZGR|1|LA|A|375
8ZGR|1|LA|G|376
8ZGR|1|LA|A|377
8ZGR|1|LA|A|378
8ZGR|1|LA|C|379
*
8ZGR|1|LA|G|390
8ZGR|1|LA|A|391
8ZGR|1|LA|G|392
8ZGR|1|LA|U|393
8ZGR|1|LA|G|394
8ZGR|1|LA|A|395
8ZGR|1|LA|A|396
8ZGR|1|LA|A|397
8ZGR|1|LA|A|398
8ZGR|1|LA|A|399
8ZGR|1|LA|G|400
8ZGR|1|LA|U|401
8ZGR|1|LA|A|402
8ZGR|1|LA|C|403
8ZGR|1|LA|G|404
*
8ZGR|1|LC|C|19
8ZGR|1|LC|U|20
Current chains
- Chain LA
- 25S rRNA (3393-MER)
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LR
- Large ribosomal subunit protein uL22A
- Chain La
- Large ribosomal subunit protein uL24A
- Chain Ln
- Large ribosomal subunit protein eL39
Coloring options: