J3_8ZGR_007

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UC*GAGGACUGCG*CAAGGA

Length

18 nucleotides

Bulged bases

8ZGR|1|LA|A|591, 8ZGR|1|LA|C|592, 8ZGR|1|LA|U|593, 8ZGR|1|LA|A|606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZGR_007 not in the Motif Atlas

Homologous match to J3_8P9A_048

Geometric discrepancy: 0.4795

The information below is about J3_8P9A_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86133.1

Basepair signature

cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8ZGR|1|LA|U|501
8ZGR|1|LA|C|502
*
8ZGR|1|LA|G|587
8ZGR|1|LA|A|588
8ZGR|1|LA|G|589
8ZGR|1|LA|G|590
8ZGR|1|LA|A|591
8ZGR|1|LA|C|592
8ZGR|1|LA|U|593
8ZGR|1|LA|G|594
8ZGR|1|LA|C|595
8ZGR|1|LA|G|596
*
8ZGR|1|LA|C|605
8ZGR|1|LA|A|606
8ZGR|1|LA|A|607
8ZGR|1|LA|G|608
8ZGR|1|LA|G|609
8ZGR|1|LA|A|610

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL4A

Chain LH

Large ribosomal subunit protein eL6B

Chain LI

Large ribosomal subunit protein uL30A

Chain Lg

Large ribosomal subunit protein eL32