J3_8ZGR_015

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGAUGG*CGUUUCAAAGG*CACCAU

Length

23 nucleotides

Bulged bases

8ZGR|1|LA|C|1555, 8ZGR|1|LA|A|1557, 8ZGR|1|LA|G|1559, 8ZGR|1|LA|C|1580, 8ZGR|1|LA|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZGR_015 not in the Motif Atlas

Homologous match to J3_9PN5_015

Geometric discrepancy: 0.3037

The information below is about J3_9PN5_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_53783.2

Basepair signature

cWW-tSH-tHW-F-tWW-F-tHS-F-cWW-cWW-F-tWW-F

Number of instances in this motif group

3

Unit IDs

8ZGR|1|LA|A|1536
8ZGR|1|LA|G|1537
8ZGR|1|LA|A|1538
8ZGR|1|LA|U|1539
8ZGR|1|LA|G|1540
8ZGR|1|LA|G|1541
*
8ZGR|1|LA|C|1550
8ZGR|1|LA|G|1551
8ZGR|1|LA|U|1552
8ZGR|1|LA|U|1553
8ZGR|1|LA|U|1554
8ZGR|1|LA|C|1555
8ZGR|1|LA|A|1556
8ZGR|1|LA|A|1557
8ZGR|1|LA|A|1558
8ZGR|1|LA|G|1559
8ZGR|1|LA|G|1560
*
8ZGR|1|LA|C|1578
8ZGR|1|LA|A|1579
8ZGR|1|LA|C|1580
8ZGR|1|LA|C|1581
8ZGR|1|LA|A|1582
8ZGR|1|LA|U|1583

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LD

Large ribosomal subunit protein uL2A

Chain LJ

Large ribosomal subunit protein eL8A

Chain LP

Large ribosomal subunit protein eL15A

Chain LZ

Large ribosomal subunit protein uL23

Chain Ll

Large ribosomal subunit protein eL37A