J3_8ZGR_016

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZGR_016 not in the Motif Atlas

Homologous match to J3_8P9A_087

Geometric discrepancy: 0.1564

The information below is about J3_8P9A_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.1

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

8ZGR|1|LA|C|1630
8ZGR|1|LA|A|1631
*
8ZGR|1|LA|U|1640
8ZGR|1|LA|A|1641
8ZGR|1|LA|A|1642
8ZGR|1|LA|C|1643
8ZGR|1|LA|U|1644
*
8ZGR|1|LA|A|1809
8ZGR|1|LA|G|1810

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lb

Large ribosomal subunit protein eL27A

Chain Li

Large ribosomal subunit protein eL34A