J3_8ZGR_018
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- 8ZGR|1|LA|U|2513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZGR_018 not in the Motif Atlas
- Homologous match to J3_8CRE_019
- Geometric discrepancy: 0.0635
- The information below is about J3_8CRE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84052.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8ZGR|1|LA|A|2431
8ZGR|1|LA|U|2432
8ZGR|1|LA|U|2433
8ZGR|1|LA|G|2434
*
8ZGR|1|LA|C|2511
8ZGR|1|LA|U|2512
8ZGR|1|LA|U|2513
8ZGR|1|LA|A|2514
8ZGR|1|LA|U|2515
8ZGR|1|LA|U|2516
*
8ZGR|1|LA|A|2589
8ZGR|1|LA|A|2590
8ZGR|1|LA|G|2591
8ZGR|1|LA|A|2592
8ZGR|1|LA|C|2593
8ZGR|1|LA|A|2594
8ZGR|1|LA|U|2595
8ZGR|1|LA|U|2596
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain LJ
- Large ribosomal subunit protein eL8A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain Lk
- Large ribosomal subunit protein eL36A
Coloring options: