J3_8ZGY_010
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 8ZGY|1|LA|A|1064, 8ZGY|1|LA|A|1092, 8ZGY|1|LA|U|1093, 8ZGY|1|LA|U|1094
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZGY_010 not in the Motif Atlas
- Homologous match to J3_8CRE_011
- Geometric discrepancy: 0.2534
- The information below is about J3_8CRE_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_09667.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8ZGY|1|LA|U|985
8ZGY|1|LA|U|986
*
8ZGY|1|LA|A|1061
8ZGY|1|LA|G|1062
8ZGY|1|LA|A|1063
8ZGY|1|LA|A|1064
8ZGY|1|LA|G|1065
*
8ZGY|1|LA|C|1091
8ZGY|1|LA|A|1092
8ZGY|1|LA|U|1093
8ZGY|1|LA|U|1094
8ZGY|1|LA|U|1095
8ZGY|1|LA|G|1096
8ZGY|1|LA|A|1097
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LI
- Large ribosomal subunit protein uL30A
- Chain LV
- Large ribosomal subunit protein eL21A
- Chain Ld
- Large ribosomal subunit protein eL29
Coloring options: