J3_8ZGY_017

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZGY_017 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0813

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8ZGY|1|LA|A|1653
8ZGY|1|LA|G|1654
8ZGY|1|LA|A|1655
8ZGY|1|LA|C|1656
8ZGY|1|LA|G|1657
*
8ZGY|1|LA|C|1790
8ZGY|1|LA|C|1791
*
8ZGY|1|LA|G|1795
8ZGY|1|LA|A|1796
8ZGY|1|LA|A|1797
8ZGY|1|LA|A|1798
8ZGY|1|LA|A|1799
8ZGY|1|LA|U|1800

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain Li

Large ribosomal subunit protein eL34A

Chain Lr

Large ribosomal subunit protein eL43A