J3_8ZGY_022

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8ZGY|1|LA|A|2886, 8ZGY|1|LA|U|2887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZGY_022 not in the Motif Atlas

Homologous match to J3_8CRE_023

Geometric discrepancy: 0.0623

The information below is about J3_8CRE_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_62630.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8ZGY|1|LA|U|2885
8ZGY|1|LA|A|2886
8ZGY|1|LA|U|2887
8ZGY|1|LA|C|2888
*
8ZGY|1|LA|G|2913
8ZGY|1|LA|U|2914
8ZGY|1|LA|U|2915
*
8ZGY|1|LA|A|2929
8ZGY|1|LA|C|2930
8ZGY|1|LA|U|2931
8ZGY|1|LA|A|2932
8ZGY|1|LA|A|2933
8ZGY|1|LA|U|2934
8ZGY|1|LA|A|2935

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LQ

Large ribosomal subunit protein uL13A

Chain LX

Large ribosomal subunit protein uL14A