J3_8ZGY_034
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZGY_034 not in the Motif Atlas
- Geometric match to J3_8P9A_076
- Geometric discrepancy: 0.3145
- The information below is about J3_8P9A_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
8ZGY|1|S2|C|1161
8ZGY|1|S2|C|1162
8ZGY|1|S2|A|1163
8ZGY|1|S2|G|1164
*
8ZGY|1|S2|C|1581
8ZGY|1|S2|U|1582
8ZGY|1|S2|A|1583
8ZGY|1|S2|G|1584
8ZGY|1|S2|U|1585
8ZGY|1|S2|A|1586
8ZGY|1|S2|A|1587
*
8ZGY|1|S2|U|1609
8ZGY|1|S2|G|1610
8ZGY|1|S2|A|1611
8ZGY|1|S2|U|1612
8ZGY|1|S2|U|1613
8ZGY|1|S2|A|1614
8ZGY|1|S2|C|1615
8ZGY|1|S2|G|1616
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SB
- Small ribosomal subunit protein uS7
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SL
- Small ribosomal subunit protein eS28A
Coloring options: