3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CUUAAUUU*GGGGAAACUCAC*GGCCG
Length
25 nucleotides
Bulged bases
8ZGY|1|S2|G|1199, 8ZGY|1|S2|G|1201
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8ZGY|1|S2|C|1180
8ZGY|1|S2|U|1181
8ZGY|1|S2|U|1182
8ZGY|1|S2|A|1183
8ZGY|1|S2|A|1184
8ZGY|1|S2|U|1185
8ZGY|1|S2|U|1186
8ZGY|1|S2|U|1187
*
8ZGY|1|S2|G|1198
8ZGY|1|S2|G|1199
8ZGY|1|S2|G|1200
8ZGY|1|S2|G|1201
8ZGY|1|S2|A|1202
8ZGY|1|S2|A|1203
8ZGY|1|S2|A|1204
8ZGY|1|S2|C|1205
8ZGY|1|S2|U|1206
8ZGY|1|S2|C|1207
8ZGY|1|S2|A|1208
8ZGY|1|S2|C|1209
*
8ZGY|1|S2|G|1454
8ZGY|1|S2|G|1455
8ZGY|1|S2|C|1456
8ZGY|1|S2|C|1457
8ZGY|1|S2|G|1458

Current chains

Chain S2
chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SE
Small ribosomal subunit protein uS19
Chain SH
Small ribosomal subunit protein uS13A
Chain SJ
Small ribosomal subunit protein uS10
Chain SM
Small ribosomal subunit protein uS14A
Chain SN
Small ribosomal subunit protein eS31

Coloring options:

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