3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CACUG*CGUGCUGG*CGAG
Length
17 nucleotides
Bulged bases
8ZGY|1|S2|U|1473, 8ZGY|1|S2|G|1539
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8ZGY_042 not in the Motif Atlas
Geometric match to J3_8CRE_086
Geometric discrepancy: 0.2745
The information below is about J3_8CRE_086
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

8ZGY|1|S2|C|1470
8ZGY|1|S2|A|1471
8ZGY|1|S2|C|1472
8ZGY|1|S2|U|1473
8ZGY|1|S2|G|1474
*
8ZGY|1|S2|C|1533
8ZGY|1|S2|G|1534
8ZGY|1|S2|U|1535
8ZGY|1|S2|G|1536
8ZGY|1|S2|C|1537
8ZGY|1|S2|U|1538
8ZGY|1|S2|G|1539
8ZGY|1|S2|G|1540
*
8ZGY|1|S2|C|1571
8ZGY|1|S2|G|1572
8ZGY|1|S2|A|1573
8ZGY|1|S2|G|1574

Current chains

Chain S2
chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SB
Small ribosomal subunit protein uS7
Chain SH
Small ribosomal subunit protein uS13A
Chain SI
Small ribosomal subunit protein eS19A
Chain SK
Small ribosomal subunit protein eS25A

Coloring options:


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