J3_8ZH3_038
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 8ZH3|1|S2|G|1199, 8ZH3|1|S2|G|1201, 8ZH3|1|S2|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZH3_038 not in the Motif Atlas
- Geometric match to J3_8CRE_080
- Geometric discrepancy: 0.0786
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8ZH3|1|S2|C|1180
8ZH3|1|S2|U|1181
8ZH3|1|S2|U|1182
8ZH3|1|S2|A|1183
8ZH3|1|S2|A|1184
8ZH3|1|S2|U|1185
8ZH3|1|S2|U|1186
8ZH3|1|S2|U|1187
*
8ZH3|1|S2|G|1198
8ZH3|1|S2|G|1199
8ZH3|1|S2|G|1200
8ZH3|1|S2|G|1201
8ZH3|1|S2|A|1202
8ZH3|1|S2|A|1203
8ZH3|1|S2|A|1204
8ZH3|1|S2|C|1205
8ZH3|1|S2|U|1206
8ZH3|1|S2|C|1207
8ZH3|1|S2|A|1208
8ZH3|1|S2|C|1209
*
8ZH3|1|S2|G|1454
8ZH3|1|S2|G|1455
8ZH3|1|S2|C|1456
8ZH3|1|S2|C|1457
8ZH3|1|S2|G|1458
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SE
- Small ribosomal subunit protein uS19
- Chain SH
- Small ribosomal subunit protein uS13A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain SN
- Small ribosomal subunit protein eS31
- Chain Ta
- Transfer RNA; tRNA
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