J3_8ZH3_039
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 8ZH3|1|S2|A|1217, 8ZH3|1|S2|G|1445, 8ZH3|1|S2|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZH3_039 not in the Motif Atlas
- Geometric match to J3_8CRE_081
- Geometric discrepancy: 0.1191
- The information below is about J3_8CRE_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.2
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8ZH3|1|S2|C|1215
8ZH3|1|S2|C|1216
8ZH3|1|S2|A|1217
8ZH3|1|S2|G|1218
8ZH3|1|S2|A|1219
8ZH3|1|S2|C|1220
*
8ZH3|1|S2|G|1263
8ZH3|1|S2|G|1264
8ZH3|1|S2|G|1265
8ZH3|1|S2|U|1266
8ZH3|1|S2|G|1267
*
8ZH3|1|S2|U|1442
8ZH3|1|S2|U|1443
8ZH3|1|S2|A|1444
8ZH3|1|S2|G|1445
8ZH3|1|S2|A|1446
8ZH3|1|S2|C|1447
8ZH3|1|S2|G|1448
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SC
- Small ribosomal subunit protein eS10A
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain SN
- Small ribosomal subunit protein eS31
Coloring options: