J3_8ZH3_041
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZH3_041 not in the Motif Atlas
- Geometric match to J3_8CRE_083
- Geometric discrepancy: 0.0707
- The information below is about J3_8CRE_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.4
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8ZH3|1|S2|U|1293
8ZH3|1|S2|G|1294
*
8ZH3|1|S2|U|1303
8ZH3|1|S2|G|1304
8ZH3|1|S2|U|1305
8ZH3|1|S2|C|1306
*
8ZH3|1|S2|G|1318
8ZH3|1|S2|A|1319
8ZH3|1|S2|U|1320
8ZH3|1|S2|A|1321
8ZH3|1|S2|A|1322
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SG
- Small ribosomal subunit protein eS17A
- Chain SP
- Small ribosomal subunit protein uS2A
- Chain SR
- Small ribosomal subunit protein uS5
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