J3_8ZH3_044
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 8ZH3|1|S2|U|1473, 8ZH3|1|S2|G|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZH3_044 not in the Motif Atlas
- Geometric match to J3_8CRE_086
- Geometric discrepancy: 0.1167
- The information below is about J3_8CRE_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
8ZH3|1|S2|C|1470
8ZH3|1|S2|A|1471
8ZH3|1|S2|C|1472
8ZH3|1|S2|U|1473
8ZH3|1|S2|G|1474
*
8ZH3|1|S2|C|1533
8ZH3|1|S2|G|1534
8ZH3|1|S2|U|1535
8ZH3|1|S2|G|1536
8ZH3|1|S2|C|1537
8ZH3|1|S2|U|1538
8ZH3|1|S2|G|1539
8ZH3|1|S2|G|1540
*
8ZH3|1|S2|C|1571
8ZH3|1|S2|G|1572
8ZH3|1|S2|A|1573
8ZH3|1|S2|G|1574
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SB
- Small ribosomal subunit protein uS7
- Chain SH
- Small ribosomal subunit protein uS13A
- Chain SI
- Small ribosomal subunit protein eS19A
- Chain SK
- Small ribosomal subunit protein eS25A
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