J3_8ZHB_003

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAUG*CGUCAUAGAG*CGUGUG

Length

21 nucleotides

Bulged bases

8ZHB|1|LA|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZHB_003 not in the Motif Atlas

Homologous match to J3_8P9A_044

Geometric discrepancy: 0.1107

The information below is about J3_8P9A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97456.1

Basepair signature

cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8ZHB|1|LA|C|185
8ZHB|1|LA|U|186
8ZHB|1|LA|A|187
8ZHB|1|LA|U|188
8ZHB|1|LA|G|189
*
8ZHB|1|LA|C|205
8ZHB|1|LA|G|206
8ZHB|1|LA|U|207
8ZHB|1|LA|C|208
8ZHB|1|LA|A|209
8ZHB|1|LA|U|210
8ZHB|1|LA|A|211
8ZHB|1|LA|G|212
8ZHB|1|LA|A|213
8ZHB|1|LA|G|214
*
8ZHB|1|LA|C|226
8ZHB|1|LA|G|227
8ZHB|1|LA|U|228
8ZHB|1|LA|G|229
8ZHB|1|LA|U|230
8ZHB|1|LA|G|231

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

Large ribosomal subunit protein uL4A

Chain La

Large ribosomal subunit protein uL24A