J3_8ZHB_035
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8ZHB|1|S2|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZHB_035 not in the Motif Atlas
- Geometric match to J3_8CRE_077
- Geometric discrepancy: 0.3611
- The information below is about J3_8CRE_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94999.1
- Basepair signature
- cWW-tWW-cWW-tWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8ZHB|1|S2|C|1037
8ZHB|1|S2|U|1038
8ZHB|1|S2|A|1039
*
8ZHB|1|S2|U|1079
8ZHB|1|S2|U|1080
8ZHB|1|S2|A|1081
8ZHB|1|S2|C|1082
8ZHB|1|S2|G|1083
*
8ZHB|1|S2|C|1090
8ZHB|1|S2|A|1091
8ZHB|1|S2|A|1092
8ZHB|1|S2|A|1093
8ZHB|1|S2|G|1094
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SP
- Small ribosomal subunit protein uS2A
- Chain Sa
- Small ribosomal subunit protein eS21A
- Chain Sb
- Small ribosomal subunit protein uS8A
- Chain Se
- Small ribosomal subunit protein eS26B
- Chain Sf
- Small ribosomal subunit protein eS27A
Coloring options: