Motif J3_41498.1 Version J3_41498.1 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-4 | 5-10 | 6-7 | 8-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8CRE_077 | 8CRE | 0.0000 | 1 | CM | SSU rRNA | C | 1022 | U | 1023 | A | 1024 | * | U | 1064 | U | 1065 | A | 1066 | C | 1067 | G | 1068 | * | C | 1075 | A | 1076 | A | 1077 | G | 1079 | cWW | tWW | cWW | tWW | ncSW | cWW |
| 2 | J3_9SUM_031 | 9SUM | 0.1685 | 1 | CA | SSU rRNA | C | 1007 | U | 1008 | A | 1009 | * | U | 1049 | U | 1050 | A | 1051 | C | 1052 | G | 1053 | * | C | 1060 | A | 1061 | A | 1062 | G | 1064 | cWW | tWW | cWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUA*UUACG*CAAAG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*UAC*AAA | 2 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tWW-cWW-tWW-cWW-F-F
- Heat map statistics
- Min 0.17 | Avg 0.08 | Max 0.17
Coloring options: