J3_8ZHC_004

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAUAGCGAACAAGUAC*GGAAAG*CUUG

Length

27 nucleotides

Bulged bases

8ZHC|1|LA|U|343, 8ZHC|1|LA|A|351, 8ZHC|1|LC|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZHC_004 not in the Motif Atlas

Homologous match to J3_8P9A_045

Geometric discrepancy: 0.0809

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

8ZHC|1|LA|C|340
8ZHC|1|LA|G|341
8ZHC|1|LA|A|342
8ZHC|1|LA|U|343
8ZHC|1|LA|A|344
8ZHC|1|LA|G|345
8ZHC|1|LA|C|346
8ZHC|1|LA|G|347
8ZHC|1|LA|A|348
8ZHC|1|LA|A|349
8ZHC|1|LA|C|350
8ZHC|1|LA|A|351
8ZHC|1|LA|A|352
8ZHC|1|LA|G|353
8ZHC|1|LA|U|354
8ZHC|1|LA|A|355
8ZHC|1|LA|C|356
*
8ZHC|1|LA|G|363
8ZHC|1|LA|G|364
8ZHC|1|LA|A|365
8ZHC|1|LA|A|366
8ZHC|1|LA|A|367
8ZHC|1|LA|G|368
*
8ZHC|1|LC|C|21
8ZHC|1|LC|U|22
8ZHC|1|LC|U|23
8ZHC|1|LC|G|24

Current chains

Chain LA

25S rRNA (3393-MER)

Chain LC

5.8S rRNA (158-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL4A

Chain La

Large ribosomal subunit protein uL24A

Chain Ll

Large ribosomal subunit protein eL37A

Chain Ln

Large ribosomal subunit protein eL39

Chain pp

Peptide 2k