J3_8ZHC_007
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 8ZHC|1|LA|A|591, 8ZHC|1|LA|C|592, 8ZHC|1|LA|U|593, 8ZHC|1|LA|A|606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZHC_007 not in the Motif Atlas
- Homologous match to J3_8P9A_048
- Geometric discrepancy: 0.4674
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86133.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8ZHC|1|LA|U|501
8ZHC|1|LA|C|502
*
8ZHC|1|LA|G|587
8ZHC|1|LA|A|588
8ZHC|1|LA|G|589
8ZHC|1|LA|G|590
8ZHC|1|LA|A|591
8ZHC|1|LA|C|592
8ZHC|1|LA|U|593
8ZHC|1|LA|G|594
8ZHC|1|LA|C|595
8ZHC|1|LA|G|596
*
8ZHC|1|LA|C|605
8ZHC|1|LA|A|606
8ZHC|1|LA|A|607
8ZHC|1|LA|G|608
8ZHC|1|LA|G|609
8ZHC|1|LA|A|610
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LH
- Large ribosomal subunit protein eL6B
- Chain LI
- Large ribosomal subunit protein uL30A
- Chain Lg
- Large ribosomal subunit protein eL32
Coloring options: