J3_8ZHC_010

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

8ZHC|1|LA|A|1064, 8ZHC|1|LA|U|1093, 8ZHC|1|LA|U|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZHC_010 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4942

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8ZHC|1|LA|U|985
8ZHC|1|LA|U|986
*
8ZHC|1|LA|A|1061
8ZHC|1|LA|G|1062
8ZHC|1|LA|A|1063
8ZHC|1|LA|A|1064
8ZHC|1|LA|G|1065
*
8ZHC|1|LA|C|1091
8ZHC|1|LA|A|1092
8ZHC|1|LA|U|1093
8ZHC|1|LA|U|1094
8ZHC|1|LA|U|1095
8ZHC|1|LA|G|1096
8ZHC|1|LA|A|1097

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LI

Large ribosomal subunit protein uL30A

Chain LV

Large ribosomal subunit protein eL21A

Chain Ld

Large ribosomal subunit protein eL29