J3_8ZHC_014
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZHC_014 not in the Motif Atlas
- Homologous match to J3_8CRE_015
- Geometric discrepancy: 0.0861
- The information below is about J3_8CRE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_31965.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8ZHC|1|LA|U|1525
8ZHC|1|LA|C|1526
8ZHC|1|LA|G|1527
8ZHC|1|LA|A|1528
8ZHC|1|LA|U|1529
8ZHC|1|LA|C|1530
*
8ZHC|1|LA|G|1590
8ZHC|1|LA|G|1591
8ZHC|1|LA|A|1592
8ZHC|1|LA|A|1593
8ZHC|1|LA|U|1594
*
8ZHC|1|LA|A|1611
8ZHC|1|LA|A|1612
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LZ
- Large ribosomal subunit protein uL23
- Chain Li
- Large ribosomal subunit protein eL34A
- Chain Lm
- Large ribosomal subunit protein eL38
- Chain Ln
- Large ribosomal subunit protein eL39
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