J3_8ZHC_019
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AGCUG*CACGUUCUAGCAUUCAAG*UGAU
- Length
- 27 nucleotides
- Bulged bases
- 8ZHC|1|LA|G|2529, 8ZHC|1|LA|A|2546, 8ZHC|1|LA|C|2547, 8ZHC|1|LA|G|2548, 8ZHC|1|LA|U|2549, 8ZHC|1|LA|U|2550, 8ZHC|1|LA|C|2551, 8ZHC|1|LA|U|2552, 8ZHC|1|LA|A|2553, 8ZHC|1|LA|C|2559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZHC_019 not in the Motif Atlas
- Homologous match to J3_8CRE_020
- Geometric discrepancy: 0.3977
- The information below is about J3_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8ZHC|1|LA|A|2528
8ZHC|1|LA|G|2529
8ZHC|1|LA|C|2530
8ZHC|1|LA|U|2531
8ZHC|1|LA|G|2532
*
8ZHC|1|LA|C|2545
8ZHC|1|LA|A|2546
8ZHC|1|LA|C|2547
8ZHC|1|LA|G|2548
8ZHC|1|LA|U|2549
8ZHC|1|LA|U|2550
8ZHC|1|LA|C|2551
8ZHC|1|LA|U|2552
8ZHC|1|LA|A|2553
8ZHC|1|LA|G|2554
8ZHC|1|LA|C|2555
8ZHC|1|LA|A|2556
8ZHC|1|LA|U|2557
8ZHC|1|LA|U|2558
8ZHC|1|LA|C|2559
8ZHC|1|LA|A|2560
8ZHC|1|LA|A|2561
8ZHC|1|LA|G|2562
*
8ZHC|1|LA|U|2577
8ZHC|1|LA|G|2578
8ZHC|1|LA|A|2579
8ZHC|1|LA|U|2580
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain LJ
- Large ribosomal subunit protein eL8A
- Chain LZ
- Large ribosomal subunit protein uL23
- Chain Lb
- Large ribosomal subunit protein eL27A
- Chain Le
- Large ribosomal subunit protein eL30
- Chain Li
- Large ribosomal subunit protein eL34A
- Chain Lr
- Large ribosomal subunit protein eL43A
Coloring options: